Anyone ever throw a sample into simpler, crop it down to a shorter length, and then have to deal with a small pop or click sound at the beginning or end of the sample?

I am almost positive I am using the tool in the exact same way mad zach uses it in some of his tutorials and I can't seem to eq out the bad sounds.

However I have noticed that you don't even notice them when the samples play in a full mix, but the problem is still very annoying.

Any solutions or suggestions would be super dope